Publications

  • Rotella, D. P. 
    "Recent Results In Phosphodiesterase Inhibitor Development and CNS Applications."
    Cyclic-Nucleotide Phosphodiesterases In The Central Nervous System: From Biology to Drug Discovery (2014): 115-144.
  • Rotella, D. P. 
    "Discovery and Development of Boceprevir"
    Exp. Opin. Drug Discovery (2013) 8, 1-9.
  • Snitsarev, V., Young, M. N., Miller, M. S. N., Rotella, D. P. 
    “The Spectral Properties of (-)-Epigallocatechin-3-O-Gallate (EGCG) Fluorescence in Different Solvents: Dependence on Solvent Polarity”
    PLoS One, (2013) 8, e79834.
  • Bhat, R., Adam, A. T., Lee, J. J., Henry, E. C, Gasiewicz, T. A., Rotella, D. P.
    “Toward the Discovery of Drug Like Epigallocatechin Gallate Analogs as Hsp90 Inhibitors”
    Bioorg. Med. Chem. Lett. (2013) 24, 2263-2266.
  • Lapeine, M., Herbert, K.G., Hill, E., and Goodey, N. M.
    "Mobile interaction and query optimization in a protein-ligand data analysis system."
    Proceedings of the ACM SIGMOD International Conference on Management of Data. (2013): 1291-1292.
  • Liu, C. T., Wang, L., Goodey, N. M., Hanoian, P. and Benkovic S. J.
    "Temporally Overlapped but Uncoupled Motions in Dihydrofolate Reductase Catalysis."
    Biochemistry (2013) 52 (32): 5332–5334.
  • Jian, S., Liu, X, Sun, H., and Hou, S.
    "The electrochemical studies of cytochrome c incorporated in 3D porous calcium alginate films on glassy carbon electrodes."
    RSC Advances 4, no.12 (2014): 6165-6172.
  • Ma, Q., Sun, H., and Hou, S.
    "Application of graphene oxide sheets incorporated in the porous calcium alginate films on the glassy carbon electrode for biosensor construction based on myoglobin."
    Journal of Applied Electrochemistry 43, no. 10 (2013): 975-984.
  • Vitarelli Jr, M. J., and Talaga, D.S.
    "Theoretical models for electrochemical impedance spectroscopy and local ζ-potential of unfolded proteins in nanopores."
    The Journal of chemical physics 139, no. 10 (2013): 105101.
  • Burow, A. M., Bates, J. E, Furche, F., and Eshuis, H.
    "Analytical first-order molecular properties and forces within the adiabatic connection random phase approximation."
    Journalof Chemical Theory and Computation 10, no. 1 (2013): 180-194.
  • Feng, H., Yuan, D., Tao, J., Weinstein, M. P., Hou, S.
    “Modeling Transport of Sediments and Associated Chemicals in Riverine, Estuarine and Coastal Environment”
    Journal of Hydrogeology & Hydrologic Engineering (2013) (Accepted)
  • Schlee, S., Dietrich, S., Kurcon, T., Delaney, P., Goodey, N. M., and Sterner, R.
    "Kinetic Mechanism of Indole-3-Glycerol Phosphate Synthase."
    Biochemistry 52, (2013): 132-42.
  • Xia, D., Yan, J., and Hou, S.
    "Fabrication of Nanofluidic Biochips with Nanochannels for Applications in DNA Analysis."
    Small 8, (2012): 2787-801.
  • Vishnyakov, A., Talaga, D. S., and Alexander V. Neimark.
    "DPD Simulation of Protein Conformations: From Alpha-Helices to Beta-Structures."
    Journal of Physical Chemistry Letters 3, (2012): 3081-87.
  • Rotella, D. P.
    "Monoaminergic Approaches for Treatment of Schizophrenia", in
    "Drug Discovery for Psychiatric Disorders"
    Z. Rankovic, M. Bingham, E.J. Nestler, R. Hargreaves editors, Royal Society of Chemistry, (2012): 35-55.
  • Fischer, J., Ganellin, C. R., Rotella, D.P.
    "Pioneer and Analogue Drugs", in "Analogue-based Drug Discovery III"
    J. Fischer, C. R. Ganellin, D.P. Rotella editors, John Wiley and Sons, (2012): 3-20.
  • Rotella, D. P.
    "Recent Results in Protein Kinase Inhibition for Tropical Diseases."
    Bioorganic & Medicinal Chemistry Letters 22, (2012): 6788-93.
  • Hou, S., Zhu, J.
    “Template synthesis of DNA-nanotubes: A new Approach for Gene Delivery”
    The Journal of Jining Medical College, 3, (2012): 28-36 (In Chinese).
  • Qiu, C., Dong, X., Ma, H., Hou, S., and Yang, J.
    "Electrochemical Behavior and Amperometric Detection of 4-Chlorophenol on Nano-Au Thin Films Modified Glassy Carbon Electrode."
    Electroanalysis 24, (2012): 1201-06.
  • Olsen, K.
    "The First 110 Years of Laboratory Automation: Technologies, Applications, and the Creative Scientist."
    Jala 17, (2012): 469-80.
  • Liu, Z., Zhang, H., Hou, S., and Ma, H.
    "Highly Sensitive and Selective Electrochemical Detection of L-Cysteine Using Nanoporous Gold."
    Microchimica Acta 177, (2012): 427-33.
  • Qiu, C., Wang, X., Liu, X., Hou, S., Ma, H.
    “Direct electrochemistry of glucose oxidase immobilized on nanostructured gold thin films and its application to bioelectrochemical glucose sensor”
    Electrochimica Acta, 67, (2012): 140– 146.
  • Madadrang, C. J., Kim, H. Y., Gao, G., Wang, N., Zhu, J., Feng, H., Gorring, M., Kasner, M. L., Hou, S.
    “Adsorption Behavior of EDTA-graphene oxide for Pb(II) and Heavy Metal Pollutant Removal”
    ACS Applied materials & Interface, 4, (2012): 1186−1193.
  • Wietecha, M. R., Zhu, J., Gao, G., Wang, N., Feng, H., Gorring, M. L., Kasner, M. L., Hou, S.
    “Platinum nanoparticles anchored on chelating group-modified graphene for methanol oxidation”
    Journal of Power Sources 198, (2012); 30– 35.
  • Liu, Z., Ma, X., Zhang, H., Lu, W., Ma, H., and Hou, S.
    "Simultaneous Determination of Nitrophenol Isomers Based on Beta- Cyclodextrin Functionalized Reduced Graphene Oxide."
    Electroanalysis 24, (2012): 1178-85.
  • Konas, D. W., Drilona Seci, and Safa Tamimi.
    "Synthesis of (L)-4- Fluorotryptophan."
    Synthetic Communications 42, (2012): 144-52.
  • Zieba, A. A., Richardson, C., Lucero, C. , Dieng, S.D., Gindt, Y. M., and Schelvis, J. P. M.
    "Evidence for Concerted Electron Proton Transfer in Charge Recombination between Fadh- and 306Trp in Escherichia Coli Photolyase."
    Journal of the American Chemical Society 133, (2011): 7824-36.
  • Vitarelli, M. J., Jr., Prakash, S., and Talaga, D. S.
    "Determining Nanocapillary Geometry from Electrochemical Impedance Spectroscopy Using a Variable Topology Network Circuit Model."
    Analytical Chemistry 83, (2011): 533-41.
  • Patel, A., Chojnowski, A. N., Gaskill, D., De Martini, W., Goldberg, R. L., and Siekierka, J. J.
    "The Role of a Brugia Malayi P38 Map Kinase Ortholog (Bm-Mpk1) in Parasite Anti-Oxidative Stress Responses."
    Molecular and Biochemical Parasitology 176, (2011): 90-97.
  • Liu, Z., Zhang, H., Ma, H., and Hou, S.
    "Selective Determination of P-Nitrophenol Based on Its Unique Voltammetric Behavior on Nanoporous Gold."
    Electroanalysis 23, (2011): 2851-61.
  • Humphrey, B.D., Castilo, R.E., Vega, A.H., Feliciano, A., Squires, M.E.
    “The synthesis and cyclic voltammetry of select ferrocene piano-stool isocyanide complexes.”
    Inorganica Chimica Acta, 368, (2011): 271-274.
  • Lee, J., and Goodey, N. M.
    "Catalytic Contributions from Remote Regions of Enzyme Structure."
    Chemical Reviews 111, (2011): 7595-624.
  • Goodey, N. M., Herbert, K. G., Hall, S. M., and Bagley, K. C.
    "Prediction of Residues Involved in Inhibitor Specificity in the Dihydrofolate Reductase Family."
    Biochimica Et Biophysica Acta-Proteins and Proteomics 1814, (2011): 1870-79.
  • Goodey, N. M., Alapa, M. T., Hagmann, D. F. , Korunow, S. G., Mauro, A. K., Kwon, K. S., and Hall, S. M.
    "Development of a Fluorescently Labeled Thermostable Dhfr for Studying Conformational Changes Associated with Inhibitor Binding."
    Biochemical and Biophysical Research Communications 413, (2011): 442-47.
  • Sokolowsky, K., Newton, M., Lucero, C., Wertheim, B., Freedman, J., Cortazar, F., Czochor, J., Schelvis, J. P. M., and Gindt, Y. M.
    "Spectroscopic and Thermodynamic Comparisons of Escherichia Coli DNA Photolyase and Vibrio Cholerae Cryptochrome 1."
    Journal of Physical Chemistry B 114, (2010): 7121-30.
  • Pye, V. E., Christensen, C. E., Dyer, J. H., Arent, S., and Henriksen, A.
    "Peroxisomal Plant 3-Ketoacyl-Coa Thiolase Structure and Activity Are Regulated by a Sensitive Redox Switch."
    Journal of Biological Chemistry 285, (2010): 24078-88.
  • Liotta, F., and Siekierka, J. J.
    "Apicomplexa, Trypanosoma and Parasitic Nematode Protein Kinases as Antiparasitic Therapeutic Targets."
    Current Opinion in Investigational Drugs 11, (2010): 147-56.
  • Hou, S., Su, S., Kasner, M. L., Shah, P., Patel, K., and Madarang, C. J.
    "Formation of Highly Stable Dispersions of Silane- Functionalized Reduced Graphene Oxide."
    Chemical Physics Letters 501, no. 1-3 (2010): 68-74.
  • Hou, S., Kasner, M. L., Su, S., Patel, K., and Cuellari, R.
    "Highly Sensitive and Selective Dopamine Biosensor Fabricated with Silanized Graphene."
    Journal of Physical Chemistry C 114, (2010): 14915-21.
  • Dong, L., Gari, R. R. S., Li, Z., Craig, M. M., and Hou, S.
    "Graphene-Supported Platinum and Platinum-Ruthenium Nanoparticles with High Electrocatalytic Activity for Methanol and Ethanol Oxidation."
    Carbon 48, no. 3 (Mar 2010): 781-87.
  • Dieng, S. D., and Schelvis, J. P. M.
    "Analysis of Measured and Calculated Raman Spectra of Lndole, 3-Methylindole, and Tryptophan on the Basis of Observed and Predicted Isotope Shifts."
    Journal of Physical Chemistry A 114, (2010): 10897-905.
  • Olsen, K. K.
    "Laboratory Robotics Instruction for Undergraduates at Montclair State University."
    Jala 14, (2009): 90-93.
  • Goodey, N. M. and Benkovic, S. J.
    Chapter 1. Understanding enzyme mechanism through protein chimeragenesis. Nucleic Acids and Molecular Biology, 22, Protein Engineering XI, 347, (2009): 118.
  • Suarez, J., Ranguelova, K., Schelvis, J. P. M., Magliozzo, R. S.
    “Antibiotic resistance in M. tuberculosis: Peroxidase intermediate bypass causes poor isoniazid activation by the Ser315Gly mutant of M. tuberculosis catalase-peroxidase (KatG).”
    J. Biol. Chem., 284, (2009): 16146-16155.
  • Zhao, X., Yu, S., Ranguelova, K., Suarez, J., Metlitsky, L., Schelvis, J. P. M., Magliozzo, R. S.
    “Role of the Oxyferrous Heme Intermediate and Distal Side Adduct Radical in the Catalase Activity of Mycobacterium tuberculosis KatG Revealed by the W107F Mutant.”
    J. Biol. Chem., 284, (2009): 7030-7037.
  • Ilagan, R. P., Mauro T., Konas, D. W., Craig Hemann, Deborah Durra, Russ Hille, and Dennis J. Stuehr.
    "Differences in a Conformational Equilibrium Distinguish Catalysis by the Endothelial and Neuronal Nitric- Oxide Synthase Flavoproteins."
    Journal of Biological Chemistry 283, (2008): 19603-15.
  • Goodey, N. M., and Benkovic, S. J.
    "Allosteric Regulation and Catalysis Emerge Via a Common Route."
    Nature Chemical Biology 4, (2008): 474-82.
  • Ranguelova, K., Suarez, J., Metlitssky, L., Yu, S., Brejt, S. Z., Brejt, S. Z., Zhao, L., Schelvis, J. P. M., Magliozzo, R. S.
    “Impact of distal side water and residue 315 on ligand binding to ferric M. tuberculosis catalase-peroxidase (KatG).”
    Biochemistry, 47, (2008):12583-12592.
  • Murphy, A. K., Tammaro, M., Cortazar, F., Gindt, Y. M., Schelvis, J. P. M.
    “Effect of the Cytidine Cyclobutane Dimer on the Properties of Escherichia coli DNA Photolyase.”
    J. Phys. Chem. B, 112, (2008): 15217-15226.
  • Eisenberg, A. S., and Schelvis, J. P. M.
    "Contributions of the 8-Methyl Group to the Vibrational Normal Modes of Flavin Mononucleotide and Its 5- Methyl Semiquinone Radical."
    Journal of Physical Chemistry A 112, (2008): 6179-89.